heat kernel
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Generator-based Graph Generation via Heat Diffusion
Stephenson, Anthony, Gallagher, Ian, Nemeth, Christopher
Graph generative modelling has become an essential task due to the wide range of applications in chemistry, biology, social networks, and knowledge representation. In this work, we propose a novel framework for generating graphs by adapting the Generator Matching (arXiv:2410.20587) paradigm to graph-structured data. We leverage the graph Laplacian and its associated heat kernel to define a continous-time diffusion on each graph. The Laplacian serves as the infinitesimal generator of this diffusion, and its heat kernel provides a family of conditional perturbations of the initial graph. A neural network is trained to match this generator by minimising a Bregman divergence between the true generator and a learnable surrogate. Once trained, the surrogate generator is used to simulate a time-reversed diffusion process to sample new graph structures. Our framework unifies and generalises existing diffusion-based graph generative models, injecting domain-specific inductive bias via the Laplacian, while retaining the flexibility of neural approximators. Experimental studies demonstrate that our approach captures structural properties of real and synthetic graphs effectively.
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Learning Manifold Implicitly via Explicit Heat-Kernel Learning
Manifold learning is a fundamental problem in machine learning with numerous applications. Most of the existing methods directly learn the low-dimensional embedding of the data in some high-dimensional space, and usually lack the flexibility of being directly applicable to down-stream applications. In this paper, we propose the concept of implicit manifold learning, where manifold information is implicitly obtained by learning the associated heat kernel. A heat kernel is the solution of the corresponding heat equation, which describes how ``heat'' transfers on the manifold, thus containing ample geometric information of the manifold. We provide both practical algorithm and theoretical analysis of our framework. The learned heat kernel can be applied to various kernel-based machine learning models, including deep generative models (DGM) for data generation and Stein Variational Gradient Descent for Bayesian inference. Extensive experiments show that our framework can achieve the state-of-the-art results compared to existing methods for the two tasks.